Tools

Download / Query

Data Store: Genetic and genomic data for all Arachis (peanut) data held at LIS, for browsing and download.

DSCensor: Overviews of data characteristics at LIS: genome assembly sizes, gene counts, BUSCO coverage, etc.

ArachisMine: InterMine interface to Arachis (peanut) species at LIS.

Search

Gene Search Tool: Search ArachisMine for genes by keyword.

Trait Search Tool: Search ArachisMine for traits by keyword.

Sequence Search

BLAST: Run BLASTs against LIS genomes, CDSes, and proteins.

Funnotate: Annotate your sequences.

Visualize / Browse

ArachisPheno: Repository for population scale phenotype data for Arachis (peanut) species.

GCViT: Genetic variation viewer.

Gene Family Search: Functional keyword search for gene families.

Genome Context Viewer: Browser for dynamically discovering and viewing genomic synteny across selected species.

Germplasm: View GIS location information for Arachis (peanut) accessions.

Gigwa: Genetic variation viewer.

JBrowse: Genome browser.

ZZBrowse: Interactive visualization of multiple GWAS and QTL data sets, using synteny to identify potentially conserved association regions between species.

Miscellaneous

Gene Expression Resources: Gene expression resources at PeanutBase.

Legumebot: Experimental OpenAI chatbot.

Marker-Assisted Selection: A list of traits, compiled from literature, for which MAS has been used.

NIFA PCCGP Project: Peanut Core Collection Genotype Phenotype Project.

Genomes

The Peanut Genome: High-quality genome assembly for peanut (Arachis hypogaea).

Browse A. duranensis: Genome assembly for Arachis duranensis.

Browse A. ipaensis: Genome assembly for Arachis ipaensis.