Tools

Tools

This is the tools page. It lists all of the tools in your site. The Legumeinfo Jekyll theme does not provide a tools page since not every site may want such a page, but a tools layout is provided so sites that want a tools page don't necessarily have to implement one from scratch.

The tools listed on this page are loaded from a YAML file. The tools menu on the left is not actually specific to this page. The Legumeinfo Jekyll theme supports adding this menu to any page via YAML front matter.

Browse and Search
Gene Families: Description
Maps: Description
QTL Search: Description
Gene Search: Description
Protein Domains: Description
Genome Context Viewer: Browser for dynamically discovering and viewing genomic synteny across selected species.
Data Store: Genetic and genomic data for all legume data held at LIS, for browsing and download.
Legume Mines: InterMine interfaces to legume species and genera at LIS.
DSCensor Data Overviews: Overviews of data characteristics at LIS: genome assembly sizes, gene counts, BUSCO coverage, etc.
Expression: Description
ZZBrowse GWAS/QTL: Interactive visualization of multiple GWAS and QTL data sets, using synteny to identify potentially conserved association regions between species.
Search sequences and features against sequence databases
BLAST Sequence Search: Description
BLAT Sequence Search: Description
Keyword Search: Description
SequenceServer: Description
Annotate Your Sequences: Description