Tools

Download / Query

Data Store: Genetic and genomic data for all Arachis (peanut) data held at LIS, for browsing and download.

ArachisMine: InterMine interface to Arachis (peanut) species at LIS.

Data Overviews for peanut genomic data: Overviews of data characteristics at LIS: genome assembly sizes, gene counts, BUSCO coverage, etc.

Search

Gene Search Tool: Search for genes by identifier or keyword.

Trait Search Tool: Search ArachisMine for traits by keyword.

Gene-name translator: Find corresponding gene IDs between accessions

Sequence Search

PeanutBase SequenceServer BLAST: Search sequences against genomes, coding sequences, and proteins.

Funnotate: Annotate your sequences.

Visualize / Browse

ArachisPheno: Repository for population scale phenotype data for Arachis (peanut) species.

GCViT: Genetic variation viewer.

Genome Context Viewer: Browser for dynamically discovering and viewing genomic synteny across selected species.

Germplasm: View GIS location information for Arachis (peanut) accessions.

Gigwa: Genetic variation viewer.

JBrowse: Genome browser.

ZZBrowse: Interactive visualization of multiple GWAS and QTL data sets, using synteny to identify potentially conserved association regions between species.

Miscellaneous

Gene Expression Resources: Gene expression resources at PeanutBase.

Legumebot: Experimental OpenAI chatbot.

Marker-Assisted Selection: A list of traits, compiled from literature, for which MAS has been used.

NIFA PCCGP Project: Peanut Core Collection Genotype Phenotype Project.

Genomes

The Peanut Genome: High-quality genome assembly for peanut (Arachis hypogaea).

Browse A. duranensis: Genome assembly for Arachis duranensis.

Browse A. ipaensis: Genome assembly for Arachis ipaensis.