%3Ci%3EArachis%20hypogaea%20%3C%2Fi%3E%20Tifrunner%20assembly%201%20gene%20models

Arachis hypogaea Tifrunner gene models

Aligned with GMAP with options --no-chimeras --npaths=3 --totallength=100000 and fiter ed with 95% identity and 80% coverage cutoffs.

Figure legend:

• Red: There was at least one additional reported alignment. Click "Show all locations" to find all alignments for this sequence.
• Green: There were no other reported alignments.

Arachis hypogaea Tifrunner transcript data was aligned with GMAP version 2017-04 with options --no-chimeras --npaths=3 --totallength=100000 --prunelevel=3 and filtered with 95% identity and 80% coverage cutoffs. If this resulted in more than 12 matches for a given sequence, the sequence was considered repetitive, and all matches were discarded.

References:

1. Clevenger,J.P., Froennicke,L., Bertioli,S., Bertioli, D., Ozias-Akins,P. Tanscriptome assemblies of Arachis hypogaea, in preparation.