%3Ci%3EArachis%20duranensis%3C%2Fi%3E%20%5BOzias-Akins%20et%20al.%5D

Arachis duranensis transcripts

At a zoom level > 2 Mbp, a heat map showing transcript density will be displayed.
Select "Show 2 Mbp" or less in the "Zoom" drop down menu for a more detailed view that shows each aligned sequence.

Figure legend:

• Red: There was at least one additional reported alignment. Click "Show all locations" to find all alignments for this sequence.
• Green: There were no other reported alignments.

Arachis duranensis transcriptome data was aligned with GMAP version 2014-02-28 using call: gmap --db=Aradu1.0 --min-intronlength=11 --nthreads=6 --format=gff3_match_est --prunelevel=3 and filtered with 80% identity and 50% coverage cutoffs. If this resulted in more than 12 matches for a given sequence, the sequence was considered repetitive, and all matches were discarded.

References:

1. Clevenger,J.P., Froennicke,L., Bertioli,S., Bertioli, D., Ozias-Akins,P. Tanscriptome assemblies of Arachis duranensis, in preparation.